TAGS»GEMDB

Description

• Go to TAGS»GEMDB to carry out the following actions:
  • Review records tagged by a "GEMDB Tag"
  • Remove individual records from a "GEMDB Tag"
  • Delete the whole tag
  • Permanently delete tagged markers from GEMDB
• "GEMDB Tag" are always "private" access, only your own "GEMDB Tags" are displayed.
• Tag a GEMDB database entry with a new or existing "GEMDB Tag" in GEMDB»SEARCH. (Find out more...)
• The GEMDB "Conflict Finder" uses "GEMDB Tags" as input to search for replicate scores with differing allele scores.
• BINNER»MRT TAGS can accept "GEMDB Tags" as input, so "problem" markers (e.g. for which a lot of genotype data is missing in a GEMDB project) can be identified in a GEMDB»SEARCH and submitted for binning, without preparing a BINNER input file off-line or the need to identify these markers again in MARKERS»SEARCH.
• "GEMDB Tags" can be used in the same way as a "marker set" on the MARKERS»SEARCH page, thus giving access to the related generic SSR marker information and all the filter, display and export options of MARKERS.
• To find out more about using "GEMDB Tags" and "Sample Tags", please also refer to the manual section on "GEMDB Tags" versus "Sample Tags".

How to use this option

• Select TAGS»GEMDB from the 'GENica Marker Tools' menu.
• A table with the "GEMDB Tags" you have previously created is displayed, see screenshot below. The table can be sorted by the different column headers by clicking on them.
• Click on a link next to a tag to carry out the following actions:

1. [VIEW MARKERS]: See the tagged GEMDB entries. This opens the tagged records in the GEMDB»SEARCH interface, giving access to its "combine searches" feature, as well as its display and export options.
2. [View MRT Markers]: Open the tagged markers in the MARKERS»SEARCH interface. This gives access to filter and export options as well as information on multiplex-ready^TM markers, if applicable.
3. [EDIT MARKER TAGS]: Remove a "GEMDB Tag" from one or more records. A new interface opens, select the [UNTAG] link next to unwanted entries. This will only remove the tag, but won't delete the tagged entry from the database.
4. [DELETE TAG]: Delete a "GEMDB Tag". This will remove the tag from all the tagged records, but won't delete the tagged entries from the database.
5. [DELETE MARKERS]: Remove all the GEMDB-tagged records permanently from the GEMDB database.

IMPORTANT: Deleting tagged records with [DELETE MARKERS] removes them permanently from the GEMDB database. To double-check which entries will be deleted, open a "GEMDB tag" in GEMDB»SEARCH and review the selected records on-line or after exporting them.

The TAGS»GEMDB Interface.

Links to other user manual pages

I'd rather try the tutorial...

• Get started with the GMT Tutorial
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