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 Bioinformatics for Molecular Plant Breeding

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SNPDB»BROWSE

Log in to 'GENica Marker Tools'

Description

  • SNPDB contains user-provided genotype data for cereals. Select SNPDB»BROWSE to reach this interface.
  • Information in SNPDB is arranged in different layers, these are [Project][File][Plate][Sample][Marker][Results].
  • Reach the next lower database level for an entry by clicking the link next to it (see screenshots below).
  • Every user has EDIT and DELETE options for data they have imported. Group administrators can edit /delete data belonging to any user in the user group they administer.
  • The [VIEW] link gives access to extra information.
  • Links on the lower level pagers allow returning to higher level pagers (see links highlighted on the [Results] level in the screenshot below).
  • A "breadcrumb trail" above the data table shows how you have drilled into SNPDB (highlighted on the [Results] level in the screenshot below).
  • Rearrange the information on pagers by clicking on a column header.
  • Change the number of lines displayed per page, with the 'GENica Marker Tools' OPTIONS.
  • Related tasks:
    • To search and export genotype information from across SNPDB, refer to the section on SNPDB»SEARCH.
    • For details on how to upload your own marker data, please refer to the section on SNPDB»IMPORT.
    • For details on how access to the data in SNPDB can be controlled, please also refer to the manual sections on user groups.


Links to other user manual pages

MARKERS

»SEARCH
»SETS
»IMPORT

BINNER

»MRT TAGS
»MRT UPLOAD
»SNP TAGS
»SNP UPLOAD

GEMDB

»SEARCH
»BROWSE
»CONFLICT
»IMPORT

DARTS

»SEARCH
»BROWSE
»IMPORT

SNPDB

»SEARCH
 »BROWSE
»IMPORT

TAGS

»MARKERS
»GEMDB
»GEMDB SAMPLE
»DARTS
»DARTS SAMPLE
»SNPDB
»SNPDB SAMPLE

FILES

»LIST
»UPLOAD

OPTIONS ADMIN

»DASHBOARD
»SPECIES
Non-admin users:
»EDIT MY DETAILS
»MY GROUPS
Group admin users:
»MARKER DB IMPORT
»SNP MARKER DB IMPORT
»ELECTROGRAM IMAGE UPLOAD
»USERS
»GROUPS
Selected group admin users only:
»DArT MARKER DB IMPORT

I'd rather try the tutorial...Written in August 2007


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