GMT Tutorial Exercise 21 - Workflow 1 - Step 13
Import panel information into GeneMapper
General:
- Analysing marker data in GeneMapper is straighforward, as the Automated Designer for Whole Genome Scan macro automatically writes all of the required information into the sample submission and panels files.
- For general information on using GeneMapper®, please refer to Applied Biosystem's product documentation, e.g. their guide to microsatellite analysis.
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- Open GeneMapper and select Tools » Panel Manager from the menu tollbar. The Panel Manager dialog box appears.
- Click on "Panel Manager" in the left-hand box. A list containing the "chemistry kits" currently available in GeneMapper appears in the right-hand box.
- Select File » Import Panels on the file menu.
Browse for the panel file written by the macro. This is located in the directory folder that was created for the experiment and called: "<experiment name>_panelFILE.txt".
When correctly imported, a folder with the experiment name appears in the left-hand box of the Panel Manager window. Click on the new folder icon in the right-hand box to view the imported marker panels.
- Click OK to save changes and to close the Panel Manager window.
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