GENica

Genome Maps

View and align original and "combined" maps for Australian wheat and barley populations.
Click here to find out more about the GENica CMap installations, and how maps are entered into them.

GENica Marker Tools	A prototype database for storing, searching and editing SSR, SNP and DArT^® genotype data. The application supports the set-up and analysis of genotyping experiments with Multiplex-Ready^TM markers through online and downloadable applications. To find out more, try the tutorial , read the user manual or view screenshots. Contact Gregory Lott to receive a login.
Marker Binner	Create groups of microsatellite markers that can be analysed together on a sequencer to reduce genotyping costs. This is the stand-alone version; an integrated version of Marker Binner* is available in GENica Marker Tools (see above).* Click here for the Marker Binner manual. Login required, contact Gregory Lott to receive a login.

GWIS

"GWIS is the wheat implementation of the International Crop Information System (ICIS), which is a database system that provides integrated management of global information on genetic resources and crop cultivars. This includes germplasm pedigrees, field evaluations, structural and functional genomic data (including links to external plant databases) and environmental (GIS) data."
Data was curated by the Plant Improvement Group at the University of Queensland.
Click on the "Search GWIS Database" button to access germplam information for Rice, Wheat, Maize and Sorghum.

BASC ESTDB	The public BASC ESTDB gives access to NCBI wheat and barley EST sequences, quality-trimmed and grouped into contigs and clusters. A "Contig view" displays each contig's ESTs, alongside archived BLASTX and BLASTN results for the contig sequence, and a link to the corresponding genome region in Gramene's "Oryza sativa contig viewer". Barley and wheat ESTDB are updated twice a year.
MPBCRC SOE BLAST	Perform a BLAST search of general and custom databases for matches to your input nucelotide or protein sequence(s). Results can be directly imported into "Son of Eric" (SOE).
Son of Eric (SOE)	SOE allows genome browsing and bioinformatic analyses. It maintains an audit trail of analyses conducted. Use SOE in combination with MPBCRC SOE BLAST to track search results obtained at different times, from different databases, etc. Data can be stored with public access (no login required) or with restricted access. To obtain a restricted access account, contact the CCG.
Multidotter	Multidotter is a dot-matrix program that can compare three or more sequences, graphically identifying regions that are conserved between at least two of the sequences. Find out more...
GenBank Batch	An easy-to-use web-based interface to retrieve multiple sequences from GenBank.
EMBOSS	Access the CCG web installation of EMBOSS to analyse and align nucleotide and protein sequences. For options requiring command line or sequence database access, contact the CCG for advice.