| Marker DB Field:
| Data Type:
| Description:
|
| Code | Number | Primary key used to identify each record in the database
|
| Marker number | Text | Laboratory number of each published marker
|
| Published marker name | Text | Published name for each marker
|
| Marker prefix | Text | Prefix to identify each marker according to type
|
| Origin of marker | Text | Research group who developed the marker, or reference to the journal article in which it was published
|
| Fwd primer sequence | Text | Forward primer sequence
|
| Rvs primer sequence | Text | Reverse primer sequence
|
| Type of marker | Text | SSR, STS, ESTSST, etc.
|
| Chromosomal location | Text | Reported chromosomal location(s) of marker
|
| Putative QTL linkages | Text | Reported marker/trait associations
|
| MQ | Text | Marker Quality score according to Stephenson et al. (1998)
|
| MQ comments | Text | Additional comments about marker quality
|
| OptConc | Number | Optimal nanomolar primer concentration for multiplex-ready assay
|
| ABI instrument | Text | DNA fragment analyser used to characterise the marker
|
| Dilution Factor | Text | Final dilution of PCR products loaded onto the DNA fragment analyser
|
| Desalt Method | Text | Method used to desalt the PCR products in preparation for DNA fragment analysis
|
| SRnge1 - min | Number | Size of smallest PCR fragment (in bp) for PCR fragment size range 1 - used by binning software to construct multiplex marker panels
|
| SRnge1 - max | Number | Size of largest PCR fragment (in bp) for PCR fragment size range 1 - used by binning software to construct multiplex marker panels
|
| SRnge2 - min | Number | Size of smallest PCR fragment (in bp) for PCR fragment size range 2 - used by binning software to construct multiplex marker panels
|
| SRnge2 - max | Number | Size of largest PCR fragment (in bp) for PCR fragment size range 2 - used by binning software to construct multiplex marker panels
|
| SRnge3 - min | Number | Size of smallest PCR fragment (in bp) for PCR fragment size range 3 - used by binning software to construct multiplex marker panels
|
| SRnge3 - max | Number | Size of largest PCR fragment (in bp) for PCR fragment size range 3 - used by binning software to construct multiplex marker panels
|
| SRnge4 - min | Number | Size of smallest PCR fragment (in bp) for PCR fragment size range 4 - used by binning software to construct multiplex marker panels
|
| SRnge4 - max | Number | Size of largest PCR fragment (in bp) for PCR fragment size range 4 - used by binning software to construct multiplex marker panels
|
| Spatial Variants | Text |
|
| Spatial Variants Comments | Text |
|
| SRnge1 - comment | Text |
|
| SRnge2 - comment | Text |
|
| SRnge3 - comment | Text |
|
| SRnge4 - comment | Text |
|
| OpenElect | Hyperlink | Hyperlink to JPEG image showing PCR specificity and yield for each marker
|
